BioOffice Ultra 2008 (W)
 This
ultimate suite for management and publication of biological data includes
BioDraw Ultra 11.0, ChemBio3D Ultra 11.0, ChemFinder Pro 11.0, ChemBioViz
Ultra 11.0, BioAssay Ultra 11.0, Inventory Ultra 11.0, E-Notebook Ultra
11.0, ChemDraw/Excel, the ChemDraw and Chem3D ActiveX Pro Plugins & Controls
as well as a the ChemINDEX (Index, RXN, NCI & AIDS) databases. *(W =
Windows Only)
Applications Included
- BioDraw Ultra 11.0
BioDraw Ultra makes drawing and annotating your biological pathways
quick and straightforward, adding a level of uniformity and detail
which is unmatched. Drawing elements include membranes, DNA, enzymes,
receptors, and reaction arrows, tRNA, Ribosomes, Helix Proteins, Golgi
Bodies, G-Proteins, Immunoglobins, Mitochondrion and a Plasmid Map
Tool. BioDraw Ultra now includes a Sequence Tool for drawing peptide
or nucleotide sequences using single letter codes. The sequences can
be expanded and contracted. With BioDraw Ultra 11.0, you can also store
annotations for each element in your drawing. Annotation data ranges
from manually entered text to attached documents, literature references
or links.
- ChemBio3D Ultra 11.0
This ultimate application for desktop molecular modeling and state-of-the-art
protein visualization is designed for both Chemists and Biologists.
Visualize detailed 3D protein-ligand complexes and DNA structures using
open GL graphics and stereo hardware and display and analyze Hydrogen
bonds and partial surfaces. Build small molecules using the ChemDraw
interface and see the 3D structure appear simultaneously, perform basic
Molecular modeling computations such as Alignment, Dihedral driver
MM2 experiments, Molecular Mechanics with support for MMFF94.and Dynamics.
Perform ab initio and semi-empirical calculations, and predict and
visualize NMR, IR and Raman spectra with interfaces to MOPAC, Jaguar
GAMESS and Gaussian.
- Struct=Name Pro 11.0
Struct⇔Name contains the leading comprehensive methods for converting
chemical structures into chemical names and names to structures. It
can be used for many types of compounds, including charged compounds
and salts, highly symmetric structures and many other types of inorganic
and organometallics.
- ChemNMR Pro 11.0
ChemNMR can be used to accurately estimate 13C and 1H (proton) chemical
shifts. The molecule and the spectrum appear in a new window. The chemical
shifts are displayed on the molecule and the spectrum is linked to
the structure so that clicking on a peak in the spectrum highlights
the related fragment on the molecule.
- ChemDraw/Excel Pro 11.0
ChemDraw/Excel allows the user to create chemically knowledgeable spreadsheets
within the familiar Microsoft Excel environment. You can build and
manipulate chemical structures within Excel, compute chemical properties
and perform database searches.
- Inventory Ultra 11.0
Inventory Ultra provides a complete desktop tool for tracking and organizing
storage of chemical and biological entities. Inventory uses a cascading
location model which allows users to define the granularity of the
locations of their inventory items. Individual containers can be checked
in or out or moved by users. Inventory Ultra also offers support for
Audit Trails, Bar-coding, Duplicate checking, Role based security and
access to Material Safety Data sheets (MSDS). Integration with the
ChemACX database allows users to use Inventory Ultra with their purchasing
process. ChemACX boasts an impressive list of major suppliers, from
Alfa Aesar and Aldrich, to TCI and Zeneca with hundreds in between.
- E-Notebook Ultra 11.0
E-Notebook Ultra allows users to maintain configurable lab journals
with pages from ChemDraw, Microsoft Word, Excel, PowerPoint and spectral
software. Search by structure and text, Draw reactions in ChemDraw
and stoichiometric calculations dependant upon the reaction and other
entered parameters, Retain a complete Audit trail of experiments at
each save, including username and timestamp, share prewritten protocols
that automatically add data from experiments using AutoText.
- ChemDraw ActiveX/Plugin Pro 11.0
This premier ActiveX Control/Plugin allows you to query online databases
and view & publish online structures. This installer will automatically
install the necessary Plugin or ActiveX controls based on your web
browser(s). It adds save and print abilities to ChemDraw ActiveX/Plugin
Net.
- Chem3D ActiveX Pro 11.0
This premier ActiveX Control/Plugin allows you to view & publish
online structures in 3D. This installer will automatically install
the necessary Plugin or ActiveX controls based on your web browser(s).
It adds save and print abilities to Chem3D ActiveX/Plugin Net.
Databases Included
- ChemINDEX Ultra 10.0 DVD Edition
This premier collection of databases is an extensive chemical reference
library for Windows. It includes ChemINDEX 8.0, ChemRXN 8.0, and NCI & AIDS
data on a DVD, with ChemOffice Net software.
Applications Features
(W) - Feature available on Win only
BioDraw
- Annotations
Store annotations for each element in your drawing. Annotation data ranges
from manually entered text to attached documents, literature references
or links.
- BioArt
A ChemDraw palette of customizable common biochemistry symbols including
membranes, cellular structures and more.
- Drawing Elements
Draw with common pathway elements such as membranes, DNA, enzymes, receptors,
and reaction arrows. tRNA, Ribosomes, Helix Proteins, Golgi Bodies, G-Proteins,
Immunoglobins, Mitochondrion and more!
- Integration
BioDraw works seamlessly with your other desktop programs so you can
use your pathways in presentations and publications.
- Pathway Diagrams
BioDraw includes drawing tools specifically designed for pathway diagrams;
you can create beautiful pathway diagrams in a matter of minutes.
- Plasmid
Map Tool
Create a plasmid map entering the number of base pairs in the plasmid
map and specifying ranges for regions and locations and labels for markers.
- Rotation & Integration
Rotate BioDraw objects and combine them with chemical structures.
Chem3D
- 3D Glasses
(W) Included glasses provide enhanced stereo-mode with depth shadings
to give realistic 3-dimensional quality to all Chem3D renderings. (Included
in CD-ROM purchases only.)
- Automatic Overlay
(W) Select multiple molecules and let Chem3D automatically align them
with a target molecule.
- ChemDraw LiveLink
(W) Simultaneous 2D & 3D editing! Draw structures using a ChemDraw
window embedded in the Chem3D application. This powerful feature adds
a 2D view that is always in-sync with the 3D view.
- ChemProp
(W) Advanced property parameter including BP, MP and more.
- CLogP
(W) CLogP property server provides the latest methodology for calculationg
n-octanol/water partition coefficients.
- Dihedral Driver
(W) New conformational analysis tool allows the generation
of MM2 energy plots.
- Enhanced Graphics
(W) Chem3D uses openGL to provide high quality graphics display.
- Formal
Charges
(W) Assign Formal Charges to Atoms and Chem3D will generate delocalized
charges automatically.
- GAMESS Interface
(W) Chem3D interface to GAMESS.
(Note: GAMESS application is required. See applications included section
to clarify.)
- Gaussian Interface
(W) Chem3D interface to Gaussian.
(Note: Gaussian application is required. See applications included section
to clarify.)
- Group Labels
(W) Display group labels in the Chem3D model view.
- Hydrogen Bonds
(W) Automatically display hydrogen bonds in the 3D view!
- Kekule / Delocalized
Display Mode
(W) Toggle between dashed line and alternating single-double bond representation
of delocalized and aromatic bonds.
- MM2
(W) Built in support for MM2 to generate realistic 3D structures.
- MMFF94
(W) MMFF94 is a molecular mechanics force-field that supports both organic
molecules and biopolymers. MMFF94 force field provides a richer set of
atom types than MM2.
- Model Explorer
(W) Hierarchical tree-control for exploring the structure of large models.
Import a PDB file and examine chains, groups, and ligands. This new feature
gives fine-grained control.
- Molecular Modeling & Dynamics
(W) Workstation quality molecular modeling.
- MOPAC Interface
(W) Chem3D interface to MOPAC. (Note: MOPAC application is required.
See applications included section to clarify.)
- Partial Surfaces
(W) Generate and display partial surfaces for protein active sites.
- PowerPoint
(W) Embed Chem3D models in PowerPoint files. Rotate and zoom Chem3D models
while giving a presentation.
- Schrödinger Jaguar Interface
(W) Chem3D interface to Schrödinger Jaguar, an ab-initio calculation
package. (Note: Jaguar application is required. See applications included
section to clarify.)
- Spectrum Viewer
(W) Display spectral calculation results from Jaguar, Gaussian, and GAMESS
as a graphical display in a separate window.
- Stereo Hardware Support
(W) Use Chem3D with a variety of stereo monitors, shutterglasses, & other
hardware to provide a true 3-dimentional modeling experience.
- Structure
Browser
(W) Allows users to easily scroll through a collection of small molecules
and compare their structures and properties.
ChemDraw
- Sequence Tool
Draw peptide or nucleotide sequences using using 1 and 3 letter codes.
The atoms are labeled with amino acid or nucleotide nicknames. The sequences
can be expanded and contracted.
E-Notebook
- Audit Trails
(W) Retain a complete copy of the experiment for each save, including
username and timestamp.
- AutoText
(W) Share prewritten protocols that dynamically add data from the experiment.
- ChemDraw & Stoichiometry
Calculations
(W) Stoichiometric calculations are long and tedious. E-Notebook tackles
this troublesome problem by performing the calculations for you, dependant
upon the drawn reaction and other entered parameters.
- Configurability
(W) Design forms and add buttons that are tailored to your needs. (multiple-user
configuration only)
- Document Pages
Pages contain Excel spreadsheets, Word documents, ChemDraw drawings,
spectral data, images and PowerPoint slides.
Extensive Data Types
(W) Notebook pages include ChemDraw reaction schemes, Microsoft Word
and Excel documents, and spectral data using the Galactic Spectral Control.
- Microsoft
Office & Galactic Spectra
(W) E-Notebook manages all the other kinds of data chemists store in
their notebooks. For free-form data, you can include Microsoft Word or
Excel documents. For spectral data, you can take advantage of the Galactic
Spectral Control embedded in the noteboo
- Multiple Projects
E-Notebook combines all your notebooks into one. Organize project notebooks
the way you work.
- Retrieval
Search by structure, keyword, dates and other types of data.
- SQL Server
Express 2005
(W) E-Notebook works with SQL Server Express 2005, which has self-tuning
capabilities that respond to changing usage characteristics. The allowed
database size limit is twice the previous limit for MSDE (SQL Server
2000).
Inventory
- Access ACX through Inventory
Search through the ChemACX database to add to your inventory. (Not available
in downloaded versions.)
- Access ChemACX Online
(W) Use the Inventory interface to search for compounds, their suppliers
and Material Safety Data Sheets at ChemACX.com.
- Audit Trails
Changes to locations, containers and compounds are logged to the database.
- Barcode
Generation
Assigns unique barcodes for each container in the system. Simply print
the barcode and attach it to the container.
- Cascading Location Model
A fully cascading location model. Laboratories can decide for themselves
the granularity of their locations. Some labs may define locations as
wells on plates residing on shelves inside refrigerators, which, in turn,
are found in laboratories. Another lab
- Container Management
Containers are created to represent actual containers in your facility.
Each container is assigned a unique barcode, which can be printed, using
a customized format, from the Inventory interface. Users are able to
check in and out, move, and duplicate con
- Customized Report Generation
/ Creation
Built-in report generator. Use a wizard to rapidly generate new report
templates. Customize report templates specific to your site's needs.
Create reports (with sorted data) for search results or location contents.
Reports can be exported to a variety of
- Duplicate Checking
Duplicates are detected according to the key fields the user defines
(e.g. structure, CAS number, and Substance Name).
- Import Data From Excel
(W) A stand-alone utility is available to help import Inventory data
stored in Excel worksheets into the Inventory database.
- Material Safety
Data & ChemACX
Add and search your own Material Safety Data Sheets (MSDS), as well as
search from over 20,000 MSDS within ChemACX.
- Reconcile Location Contents
(W) Reconcile location contents to ensure that database entries match
the physical contents of the location.
- Searching
Every field in a record, including chemical structure, molecular formula
and molecular weight are searchable. The application includes a number
of specially designed inventory search forms. Search results are returned
in list form. Inventory Manager also
- SQL Server Express 2005
(W) Inventory works with SQL Server Express 2005, which has self-tuning
capabilities that respond to changing usage characteristics. The allowed
database size limit is twice the previous limit for MSDE (SQL Server
2000).
- SQL Server Role Based Security
Usernames and passwords are linked to predefined roles in SQL Server.
These roles control which buttons and links are available after login.
System Requirements
- Windows Windows 2000, XP, Vista (32-bit only); Excel add-ins require
MS Excel 2000, 2003, or XP
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